Viewing tools allow quality checking at every step in the analysis.Author: Paul Mazaika URL: ASLtbx is a Matlab and SPM based toolkit for processing arterial spin labeling (ASL) perfusion MRI data.Likewise, to have your Developers take no responsibility for the usability of the extensions listed here.
those with very different numbers of cases in each group).Author: Ged Ridgway URL: Contact email above Summary: Aids normalization of clinical scans, providing an easy way to include lesion cost function masking.It is designed to answer the frequently asked question: what the *? Author: Simon Eickhoff URL: Toolbox/SPMAnatomy Toolbox_Summary: AQu A is a tool that helps you in the assessment process for the quality of the acquired f MRI data, identifying images with movement and other artefacts, so that they do not compromise the experimental analysis. Lull URL: Summary: Special methods to improve the f MRI analysis of high motion pediatric and clinical subjects.The methods correct for large motions, and automatically detect and remove artifact noise in the data.Intuitive and customizable user interface for exploring statistical images (e.g., spm T*), including display of positive and/or negative effects; voxel- and cluster-level thresholding; instant anatomical labeling; and customizable color maps. Save thresholded whole-brain maps, specific clusters, and ROIs.
View results tables interactively, and save publication-ready tables.Note: All email addresses in this page have their "@" replaced with "_at_" to minimize spam. Toolboxes: AAL | AAL2 | ACID | AICHA | ALI | ALVIN | AMAT | Analyze Movie | Anatomy | AQu A | Art Repair | aslm | ASLtbx | at4fmri | aws4SPM | BFAST3D | Brain Net Viewer | Brainnetome | BRANT | Brede Query | Bruker2nifti | bspmview | CAT | CCAf MRI | CLASS | Clinical | Complexity | conn | Conn Ex T | CPCA | DAi SS | DICOMCD_Import | Diffusion_II | DPABI | DPARSF | DRIFTER | EMS | Extract Vals | FASL | FAST | f ECM | FDR | Field Map | fieldmap_undistort | Field Trip | f MRIPower | f OSA | g PPI | Graph Var | Grid CAT | Grocer | HV | IBASPM | i Brain AT | i Brain LT | IBZM_tool | Ima GIN | INRIAlign | ISAS | lead-dbs | lesion_gnb | LI | Log Transform | Mantis | MARINA | MARS | Mars Bar | MASCOI | mf Box | Masking | Masks | MIP-C | MM | multifocal | MRTOOL | MRM | NIRS-SPM | NPBayes | NS | PETPVE12 | Ortho | Phys IO | PSPM | QModeling | REST | rfxplot | Robust WLS | SAf E | SAMIT | SCRalyze | SDM | Simple ROIBuilder | Sn PM | Spike Det | spm_wavelet | SPMd | SPMMouse | SSM | SUIT | Surf Rend | Sw E | TDT | TOM | UF2C | Unwarp2 | Var Tbx | VDB | Volumes | WBM | WSPM | WFU_Pick Atlas | xj View | XMLTools | ASLtbx | BENtbx | SVRLSMtbx | GIFT Utilities: Ave LI | Brain Magix | Bruker2Analyze | CBMG-Tools | Design_Magic | dicom2nifti | Dyn PET | Easy_ROI | Easy_Volumes | FDRill | Fluctuation | f Toolbelt | FAD | GA | GE2SPM | JG | L2S | log_roi_batch | LMGS | Matlab TFCE | Motion | mri_toolbox | MSU | Orth1 | PCT | pvconv | r2agui | SEM | slice_overlay | TSDiff Ana | TSU | i TT | VBMtools | VIS | vision To SPM | Voi Tool Batch Utilities: aa | Auto SPET | Batch AAL | KULscripts | parallelize_matlabbatch | spm_segment | SPMJobs12 | spm2-batch | spm2batch | spm2Batch | spmbatch | spmjob | X_batch | zephyr Templates: Baboon | Brain Dev_Atlas | Canine | Cerebellum | CCHMC_Pediatric | Dementia_PET | IPA_SPECT | Ovine | Macaca_Fascicularis | Macaca_Fascicularis_PET | Macaca_Mulatta | Macaca_Nemestrina | Rat | s CBT | SPMtemplates | UNC_Pediatric | Zebra_Finch Summary: Implementation of a new parcellation of the orbitofrontal cortex in the automated anatomical labeling atlas, as described in Rolls et al. Author: Gin URL: Summary: The Artefact correction in diffusion MRI (ACID) toolbox is an academic software toolkit for pre-processing of diffusion MRI data, estimation of DTI indices and normalisation of DTI index maps, which fully integrates into the batch system of SPM8.Author: Siawoosh Mohammadi URL: Summary: ALI is a research tool for lesion delineation and spatial normalization for patients with brain damage.Author: Congying Chu, Lingzhong Fan, Tianzi Jiang URL: Summary: BRANT (BRAin Netome f MRI Toolkit) is a MATLAB based toolbox which includes batch scripts with automatically generated GUIs for the preprocessing pipeline, brain spontaneous activity, functional connectivity analysis, complex network analysis, statistical analysis and results visualization.A universal input/output interface was designed for most functions, and users can customize their own scripts into GUIs by adding a few lines of MATLAB code.It's basically a collection of a bunch of batch scripts.